The first phase of our project titled "Personalized cancer medicine" has been funded by a substantial grant from the Norwegian Research Council, under the Program for publicly initiated clinical cancer studies. The scond phase, titled "A national research and innovation platform for personalized cancer medicine", is funded by their BIOTEK 2021 programme. We are applying for additional funds towards our more ambitious long-term goals.
NCGC participates in international cancer genomics benchmarking study
The precise detection of mutations in cancer samples is a challenge, and even the bebst teams internationally disagree on how to do it. The International cancer genomics Consortium (ICGC.org) has shared with such teams a data set which has been to a large extent validated, to enable comparison and optimisation of bioinformatic analysis pipelines. The NCGC Bioinformatics Team, headed by Prof. Eivind Hovig, is one of the partners in this effort, to ensure our methods are state-of-the-art. Read more here.
|Interview Ragnhild Lothe and Ola Myklebost in NRK Morning News, Feb 8th 2012, and with CEO of Oslo Cancer Cluster Jónas Einarsson on personalised cancer medicine on Norwegian TV2|
While adjuvant chemotherapy has improved long-term survival for many types of cancer, the fact that many patients relapse despite optimal treatment underlines the limitations of con-temporary therapy. The mechanisms of chemoresistance in general are poorly under¬stood; thus, we are unable to predict who will benefit or not from treatments.
Over the last decades, a number of “targeted therapies” have been approved for certain histologically defined cancers. These therapies target defined goals such as the HER-2 proto-oncogene; thus, they are effective only in cancers harboring certain gene aberrations. Notably, even among patients with tumor harboring the targeted defects, many may not respond to treatment, and eventually relapse. These findings underline the need for a wider mutation analysis to define the gene defects responsible also for drug resistance with respect to all forms of anticancer therapies.
The accumulated data on tumour mutation spectra and outcome from traditional therapies will also yield important knowledge on which of the patients are likely to benefit from such therapy, and for whom other options need to be considered. Additionally, sequencing of the constitutional (normal) DNA will enable the identification of predisposition to acute and late adverse effects.
This project is a national research collaboration among regional cancer centres as visioned by the National Coordination Group for Research in the Health Service (NSG). The main long-term objective of this joint effort is to contribute to a national diagnostic service for all Norwegian cancer patients. In addition to the strong representation of clinical groups, we have involved some of strongest national networks in medical genomics, the Norwegian Microarray Consortium and the FUGE Bioinformatics Platform, with proven experience in the relevant deep sequencing of cancer mutations, as well as the CancerBioMedicine Centre of Excellence and the Norwegian Cancer Registry.
The aims of the project is to reach five specific end-points within the first three years: 1) to investigate the mutations of known actionable genes (where treatments exist) and all kinase genes (for which multiple inhibitory drugs are available or in development) across several important cancer types using existing biobanks (9 cancer types, 3000 patients); 2) establish sampling procedures and sample logistics, bioinformatics infrastructure, analysis and pipelines, as well as procedures for feedback to the treating centres and the Cancer Registry; 3) initiate clinical prospective studies based on biological hypotheses including two or more participating centres (1000 patients); and 4) implementation of phase 1 and 2 studies based on initial findings and current know-how; and 5) educational efforts towards the health service and patients. Throughout the study, the data generated will be evaluated by scientists, clinicians and pathologists, but also by experts in health economy.
- Provide a national network for implementation of personalised cancer medicine in Norway
- Provide and disseminate methodology for deep sequencing of tumour material and identification of somatic mutations
- Initiate a number of research projects to determine the applicability of mutation profiles from the individual tumour for therapeutic decisions
- Provide the bioinformatics tools necessary to make mutation spectra clinically interpretable and for national data logistics
- Establish a nation-wide cancer mutation database in collaboration with the Cancer Registry
- Provide a dialogue on the clinical implementation of personal mutation data
- Analyse the health economic impacts of improved and standardised access to molecular targeted therapies nation-wide